Updated observers and Kalman Filter, added running average

setup.py

@@ -8,7 +8,7 @@ with open('README.md', 'r') as f:
 setup(
     name='spatz',
     version='0.0.10',
-    packages=['spatz'],
+    packages=find_packages(exclude=["_tests"]),
     long_description=longdescription,
     long_description_content_type='text/markdown',
 )

spatz/dataset.py

@@ -4,7 +4,7 @@ import numpy as np
 import pandas as pd
 
 from enum import Enum
-from typing import List
+from typing import List, Literal
 from numpy.typing import ArrayLike
 from scipy.spatial.transform import Rotation
 
@@ -338,7 +338,7 @@ class Dataset(Advanceable):
         """
         return self.fetch_values(['OMEGA_X', 'OMEGA_Y', 'OMEGA_Z'], t)
 
-    def get_velocity(self, frame='FL', t: float | None = None) -> ArrayLike:
+    def get_velocity(self, frame: Literal['L', 'B', 'LF'] = 'LF', t: float | None = None) -> ArrayLike:
         """
         Args:
             frame (str, optional): The coordinate frame to compute the velocity for. Defaults to 'FL'.
@@ -352,6 +352,8 @@ class Dataset(Advanceable):
 
         if frame == 'B':
             return self.launch_rail_to_body(t) @ vel
+        elif frame == 'L':
+            return np.linalg.inv(self.local_to_launch_rail()) @ vel
         
         return vel
 

spatz/models/average.py

@@ -0,0 +1,12 @@
+
+
+class MovingAverage:
+    def __init__(self, k: int, init_value: float) -> None:
+        self.__k = k
+        self.__values = [init_value] * k
+
+    def update(self, value):
+        self.__values.append(value)
+        self.__values = self.__values[1:]
+
+        return sum(self.__values) / self.__k

spatz/models/kalman.py

@@ -91,7 +91,7 @@ class KalmanFilter:
         K = err @ H.T @ inv(H @ err @ H.T + R)
 
         # Compute the corrected state.
-        x = x + (K @ (z - H @ x)).T
+        x = x + (K @ (z - H @ x).T).T
 
         # Compute the error after correction.
         err = (np.identity(n) - K @ H) @ err

spatz/observer/observer.py

@@ -1,4 +1,4 @@
-from typing import Any, List, Dict, AnyStr
+from typing import Any, List, Dict, AnyStr, Tuple
 from numpy.typing import ArrayLike
 
 from spatz.dataset import Dataset
@@ -7,7 +7,7 @@ from spatz.transforms import Transform
 
 
 class Observer:
-    def __init__(self, dataset: Dataset, logger: Logger, attributes: List[str]):
+    def __init__(self, dataset: Dataset, logger: Logger, attributes: List[str] = None):
         self._dataset = dataset
         self._logger = logger
         self.__attrs = attributes
@@ -30,11 +30,22 @@ class Observer:
             ArrayLike: Returns the values of the observed attributes at the start of the simulation.
         """
         return self(t=self._dataset.get_start_time())
+    
+    def _fetch(self, t: float) -> Tuple[ArrayLike, List[str]]:
+        """Method for collecting and preprocessing the desired data. Can be overwritten by a subclass.
+
+        Args:
+            t (float): The current time of the simulation.
+
+        Returns:
+            ArrayLike: The collected values.
+        """
+        return self._dataset.fetch_values(self.__attrs, t), self.__attrs
 
     def __call__(self, t: float | None = None) -> ArrayLike:
-        data = self._dataset.fetch_values(self.__attrs, t)
+        data, attrs = self._fetch(t)
 
-        for attrib, value in zip(self.__attrs, data):
+        for attrib, value in zip(attrs, data):
             self._log(attrib, value)
 
         return data        

spatz/sensors/pressure/pressure.py

@@ -10,14 +10,17 @@ from spatz.transforms import Transform
 
 
 class PressureSensor(Sensor):
-    def __init__(self, dataset: Dataset, logger: Logger, transforms: List[Transform] = [], ts_effects=True):
+    def __init__(self, dataset: Dataset, logger: Logger, transforms: List[Transform] = [], ts_effects=True, delay=0.0):
-        """
+        """_summary_
+
         Args:
             dataset (Dataset): A dataset instance.
+            logger (Logger): _description_
             transforms (List[Transform], optional): Transforms to apply to the sensor outputs. Defaults to [].
-            ts_effects (bool, optional): If True, models transsonic effects. Defaults to True.
+            ts_effects (bool, optional): If True, adds transsonic effects using a very simple model. Defaults to True.
+            delay (float, optional): Adds a delay to the pressure measurements. Defaults to 0.0.
         """
-        super(PressureSensor, self).__init__(dataset, logger, transforms)
+        super(PressureSensor, self).__init__(dataset, logger, transforms, min_value=0)
 
         self._ts_effects = ts_effects
 

spatz/sensors/sensor.py

@@ -11,10 +11,12 @@ from spatz.dataset import *
 
 
 class Sensor:
-    def __init__(self, dataset: Dataset, logger: Logger, transforms: List[Transform] = []):
+    def __init__(self, dataset: Dataset, logger: Logger, transforms: List[Transform] = [], min_value=-np.inf, max_value=np.inf):
         self._dataset = dataset
         self._logger = logger
         self._transforms = transforms
+        self._min_value = min_value
+        self._max_value = max_value
 
     def set_dataset(self, dataset: Dataset):
         self._dataset = dataset
@@ -52,6 +54,8 @@ class Sensor:
         for transform in self._transforms:
             out = transform(t, out)
 
+        out = np.clip(out, self._min_value, self._max_value)
+
         # Log the outputs of the sensor.
         if np.isscalar(out):
             self._log('out', out)

spatz/simulation.py

@@ -106,19 +106,27 @@ class Simulation:
         self.__sensors.append(sensor(self.__dataset, self.__logger, *args, **kwargs))
 
         return self.__sensors[-1]
-    
+
-    def add_observer(self, attributes: List[str]) -> Observer:
+    def add_observer(self, observer_or_attributes: List[str] | Observer) -> Observer:
-        """Register a new observer for this simulation observing the provided attributes.
+        """Register a new observer for this simulation.
 
         Args:
-            attributes (List[str]): A list of strings describing the attributes to observe.
+            observer_or_attributes (List[str] | Observer): A list of strings describing the attributes to observe 
+            or a custom observer class.
 
         Returns:
             Observer: An observer object which can be called like a function to obtain the desired data.
         """
-        assert len(attributes) != 0, "Observed attributes list must be nonempty."
+        assert isinstance(observer_or_attributes, list) or issubclass(observer_or_attributes, Observer)
 
-        self.__sensors.append(Observer(self.__dataset, self.__logger, attributes))
+        if isinstance(observer_or_attributes, list):
+            attributes = observer_or_attributes
+            assert len(attributes) != 0, "Observed attributes list must be nonempty."
+
+            self.__sensors.append(Observer(self.__dataset, self.__logger, attributes))
+        else:
+            observer = observer_or_attributes
+            self.__sensors.append(observer(self.__dataset, self.__logger))
 
         return self.__sensors[-1]